PUBLISHED/ACCEPTED PAPERS


  • 2016
  • 2015
  • 2014
  • 2013
  • 2012
  • 2011 & ealier

2016

1.Zaynab Mousavian, Abbas Nowzari-Dalini, Ronald W. Stam, Yasir Rahmatallah, Ali Masoudi-Nejad (2016) Network-based expression analysis reveals key genes related to glucocorticoid resistance in infant acute lymphoblastic leukemia. Cellular Oncology. DOI: 10.1007/s13402-016-0303-7
2.Reza Mohammadi,Jalil, Fallah-Mehrabadi, Gholamreza Bidkhori, Javad Zahiri, Mohammad Javad Niroomande, Ali Masoudi-Nejad (2016) A systems biology approach to reconcile metabolic network models with application to Synechocystis sp. PCC 6803 for biofuel production. Molecular Biosystems. DOI: 10.1039/C6MB00119J
3.Hamid Beiki, Ardeshir N Javaremi, Abbas Pakdel, Ali Masoudi-Nejad, Zhi-Liang Hu, James M Reecy (2016) Large-scale Gene Co-expression Network as a Source of Functional Annotation for Bovine Genes. BMC Genomics. DOI: 10.1186/s12864-016-3176-2
4.Zaynab Mousavian, Kaveh Kavousi, Ali Masoudi-Nejad (2016) Information Theory in Systems Biology: Signaling and Metabolic Networks. Seminars in Cell and Developmental Biology. DOI: 10.1016/j.semcdb.2015.12.007
5.Morteza Kouhsar, Zahra Razaghi-Moghadam Kashani, Zaynab Mousavian, Ali Masoudi-Nejad (2016) CeFunMO: a centrality based method for discovering functional motifs with application in biological networks. Computers in Biology and Medicine. DOI: 10.1016/j.compbiomed.2016.07.009
6.Zaynab Mousavian, Jose Diaz, Ali Masoudi-Nejad (2016) Information Theory in Systems Biology: Gene Regulatory and Protein-Protein Interaction Networks. Seminars in Cell and Developmental Biology. DOI: 10.1016/j.semcdb.2015.12.006
7.Zaynab Mousavian, SahandKhakabimamaghani, KavehKavousi, Ali Masoudi-Nejad (2015) Drug-Target Interaction Prediction from PSSM based Evolutionary Information. Journal of Pharmacological and Toxicological Methods. DOI: 10.1016/j.vascn.2015.11.002
8.Ali Masoudi-Nejad, Hector Zenil (2016) Flow of Information in Biological Systems. Seminars in Cell and Developmental Biology. DOI: 10.1016/j.semcdb.2016.03.004
9.Marzieh Dehghan-Shasaltaneh, Nasser Naghdi, Samira Choopani, Leila Alizadeh, Bahram Bolouri, Ali Masoudi-Nejad, Gholam Hossein Riazi (2016) Determination of the Best Concentration of Streptozotocin to Create a Diabetic Brain Using Histological Techniques. J Mol Neurosci. 2016 May;59(1):24-35. DOI: 10.1007/s12031-015-0702-7.
10.Atefeh Seyeddokht, Ali Asghar Aslaminejad, Ali Masoudi-Nejad, Mohammadreza Nassiri, Javad Zahiri, Balal Sadeghi (2016) Computational Detection of piRNA in Human Using Support Vector Machine. Avicenna J Med Biotechnol. 2016 Jan-Mar;8(1):36-41.
11.Mostafa Rezaei-Tavirani, Mona Zamanian-Azodi, Sepideh Rajabi, Ali Masoudi-Nejad, Mohammad RostamiNejad, Sara Rahmatirad (2016) Protein Clustering and Interactome Analysis in Parkinson and Alzheimer's Diseases.Arch Iran Med. 2016 Feb;19(2):101-9. DOI: 0161902/AIM.007.
12.Hamid Beiki, Ardeshir N Javaremi, Abbas Pakdel, Ali Masoudi-Nejad, Zhi-Liang Hu, James M Reecy )2016( Large-scale Gene Co-expression Network as a Source of Functional Annotation for Bovine Genes. BMC Genomics. ACCEPTED
13.Marzieh Dehghan-Shasaltaneh, Hossein Lanjanian, Gholam H. Riazi, Ali Masoudi-Neja (2016) The importance of α-CT and salt bridges in the formation of insulin and its receptor complex by computational simulation. Iranian Journal of Pharmaceutical Research. ACCEPTED.
14.Sadegh Sulaimany, Mohammad Khansari, Peyman Zarrineh, Madelaine Daianu, Neda Jahanshad, Paul M. Thompson, Ali Masoudi-Nejad (2015) Predicting Brain Network Changes in Alzheimer’s Disease with Link Prediction Algorithms. Molecular Biosystems. REVISED.
15.Yazdan Asgari, Zahra Zabihinpour, Ali Masoudi-Nejad (2014) SCAN-Toolbox : Structural COBRA Add-oN (SCAN) for Metabolic Networks. Current Bioinformatics. ACCEPTED.
16.Mahdieh Ghasemi, Faeze Tamimi, Zahra Narimani, Maseud Rahgozar, Ali Masoudi-Nejad (2016) NetCentra: A Program for Analyzing the Network Centrality in Biological, Social and Other Networks. SUBMITTED.
17.Isar Nassiri, Ali Masoudi-Nejad, Mahdi Jalili, Ali Moeini (2016) Sensitivity Analysis of the Brain's Signaling Network Flow: finding the optimal region of the systems for perturbation. SUBMITTED.
18.Reza Shamsaee, Mahmood Fathy, Gholamreza Bidkhori, Ali Masoudi-Nejad (2016) LuCaSim: a toolbox for Lung Cancer Modeling and Simulation. SUBMITTED.
19.Hamid Beiki, Abbas Pakdel, Ardeshir Nejati, Javaremi, Ali Masoudi-Nejad, James Reecy (2016) Cattle Bacterial Stress Response Network and its Functional Modules. BMC Immunology. SUBMITTED.

2015

1. Ali Masoudi-Nejad, Edwin Wang (2014) Cancer Modeling and Network Biology: accelerating toward personalized medicine. Seminar in Cancer Biology. doi: 10.1016/j.semcancer.2014.06.005
2. Ali Masoudi-Nejad, Yazdan Asgari (2014) Metabolic Cancer Biology: structural-based analysis of cancer as a metabolic disease, new sights and opportunities for disease treatment. Seminar in Cancer Biology. doi:10.1016/j.semcancer.2014.01.007
3. Edwin Wang, Naif Zaman, Shauna Mcgee, Jean-Sébastien Milanese, Ali Masoudi-Nejad, Maureen O'Connor (2014) Predictive Genomics: a cancer hallmark network framework for predicting tumor clinical phenotypes using genome sequencing data. Seminar in Cancer Biology. doi: 10.1016/j.semcancer.2014.04.002
4. Yazdan Asgari, Zahra Zabihipour, Falk Schreiber, Ali Masoudi-Nejad (2015) Alterations in cancer cells metabolism: the Warburg effect and metabolic adaptation. Genomics. doi: 10.1016/j.ygeno.2015.03.001
5. Ali Najafi, Ali Masoudi-Nejad, Mostafa Ghanei, Gholamreza Bidkhori, Mohamad-Reza Nourani, Ali Moeini (2015) Computational modeling of core regulatory elements controlling airway remodeling pathway in chronic lung diseases. PLOS ONE. Accepted
6. Nazanin Hosseinkhan, Peyman Zarrineh, Hassan Rokni-Zadeh, Mohammad Reza Ashouri, Ali Masoudi-Nejad (2015) Co-expressional conservation in virulence and stress related genes of three Gamma Proteobacterial species: Escherichia coli, Salmonella enterica and Pseudomonas aeruginosa. Molecular Biosystems. 11:3137-3148
7. Aida Shakouri Motlagh, Saman Hosseini Ashtiani, Hamid Keshvari, Masoumeh Firouzi, Ali Najafi, Ali Masoudi-Nejad (2015) Reconstruction of gene regulatory network reveals key apoptotic pathways and candidate survival genes after traumatic spinal cord injury. Genomics. Under Review
8. Habib MotieGhader, Sajjad Gharaghani, Yosef Masoudi- Sobhanzadeh, , Ali Masoudi-Nejad (2015) Novel hybrid Algorithms using Learning Automata and Genetic Algorithm for feature selection in QSAR: anti cancer case study.
9. Habib MotieGhader, Yosef Masoudi- Sobhanzadeh, Sajjad Gharaghani, Ali Masoudi-Nejad (2015) Feature selection in QSAR using Cuckoo Optimization Algorithm on anti-cancer data.

2014

1. Mehran Aflakparast, Hamid Salimi, Abbas Gerami, Marie-Pierre Dubé, Shyam Visweswaran, Ali Masoudi-Nejad (2014) Cuckoo Search Epistasis: a new method for exploring significant genetic interactions. Nature's Heredity. 112(6):666-74
2. Mehran Aflakparast, Joseph H. Bozorgmehr, Shyam Visweswaran, Ali Masoudi-Nejad (2014) Informative Bayesian Model Selection‎: ‎A‎ Method for Identifying Interactions in Genome-Wide Data. Molecular Biosystems. 10: 2654
3. Ali Najafi, Ali Masoudi-Nejad, Mostafa Ghanei, Mohamad Reza Nourani (2013) Microarray gene expression analysis of human airway in patients exposed to sulfur mustard. Journal of Receptors and Signal Transduction. 34(4):283-9
4. Ali Masoudi-Nejad, Zaynab Mousavian (2014) Drug-Target Interaction Prediction via Chemogenomic Space: Learning-Based Methods. Expert Opinion on Drug Metabolism and Toxicology. 10(9):1273-1287
5. Ali Masoudi-Nejad, Gholamreza Bidkhori, Saman Hosseini Ashtiani, Joseph H Bozorgmehr, Edwin Wang (2014) Cancer Systems Biology and Modeling: microscopic scale and multiscale approaches. Seminar in Cancer Biology. doi: 10.1016/j.semcancer.2014.03.003
6. Balal Sadeghi, Hamed Ahmadi, Mohammadreza Nassiri, Ali Masoudi-Nejad (2014) BosFinder: a Novell Pre-MicroRNA Gene Prediction algorithm in Bos taurus. Animal Genetics. 45(4):479-84
7. Ali Najafi, Gholamreza Bidkhori, Joseph H. Bozorgmehr, Ina Koch, Ali Masoudi-Nejad (2014) Genome Scale Modeling in Systems Biology: algorithms and resources. Current Genomics. 15 (2): 130-159
8. Ali Najafi, Ali Masoudi-Nejad, Mostafa Ghanei, Mohamad-Reza Nourani, Ali Moeini (2014) Pathway Reconstruction of Airway Remodeling in Chronic Lung Diseases: a systems biology approach. PLOS ONE. 9(6):e100094
9. Peyman Zarrineh, Aminael Sánchez-Rodríguez, Nazanin Hosseinkhan, Zahra Narimani, Ali Masoudi-Nejad, Kathleen Marchal (2014) Genome-scale co-expression network comparison between Escherichia coli, Bacillus subtilis, and Salmonella enetica serovar Typhimurium reveals conservation and divergence in their regulatory networks and explains their dissimilar lifestyles. PLOS ONE. 9(8): e102871
10. Reza Shamsaee, Mahmood Fathy, Ali Masoudi-Nejad (2014) Weighted-Directed Networks: merging weight and direction into scale free biological network. Current Bioinformatics. 9:1426-1445
11. Javad Zahiri, Morteza Mohammad-Noori, Reza Ebrahimpour, Ali Masoudi-Nejad (2014) LocFuse: Human Protein-Protein Interaction Prediction via Classifier Fusion Using Localization Information. Genomics. DOI:10.1016/j.ygeno.2014.10.006
12. Ali Salehzadeh-Yazdi, Yazdan Asgari, Ali Akbar Saboury, Ali Masoudi-Nejad (2014) Computational analysis of reciprocal association of metabolism and epigenetics in the budding yeast: a genome-scale metabolic model (GSMM) approach. PLOS ONE. DOI: 10.1371/journal.pone.0111686
13. Ali Salehzadeh-Yazdi, Yazdan Asgari, Ali Akbar Saboury, Ali Masoudi-Nejad (2014) Integrative Systems Biology: Integration of epigenetics data into kinetics modeling in Yeast. Functional & Integrative Genomics. DOI:10.
14. Nazanin Hosseinkhan, Peyman Zarrineh, Ali Masoudi-Nejad (2014) Analysis of Genome-scale Expression Network in Four Major Bacterial Residents of Cystic Fibrosis Lung. Current Genomics. 15: 408-418

2013

1. Yazdan Asgari, Ali Salehzadeh-Yazdi, Falk Schreiber, Ali Masoudi-Nejad (2013) Controllability in metabolic cancer networks according to drug targets as driver nodes. PLOS ONE 8(11): e79397.
2. Sadegh Azimzadeh, Esmaeel Azadian, Ali Masoudi-Nejad (2013) Human RNAi Pathway: crosstalk with organelles and cells. Functional and Integrative Genomics. 14(1):31-46
3. Ali Masoudi-Nejad, Zaynab Mousavian, Joseph H. Bozorgmehr (2013) Drug-Target and Disease Networks: polypharmacology in the post-genomic era. In Silico Pharmacology. 1:17
4. Gholamreza Bidkhori, Zahra Narimani, Saman Hosseini Ashtiani, Ali Moeini, Ali Masoudi-Nejad (2013) Reconstruction of integrated genome-scale coexpression network revealed key modules in lung adenocarcinoma. PLOS ONE. 8 (7), e67552
5. Javad Zahiri, Joseph Hannon Bozorgmehr, Ali Masoudi-Nejad (2013) Computational Prediction of Protein–Protein Interaction Networks: algorithms and resources. Current Genomics. 14 (6): 397-414. REVIEW
6. Mahdieh Sadat Ghasemi, Hossein Seidkhani, Faeze Tamimi, Maseud Rahgozar, Ali Masoudi-Nejad (2013) Centrality Measures in Biological Networks. Current Bioinformatics. 9:426-441
7. Mahdieh Sadat Ghasemi, Gholamreza Bidkhori, Maseud Rahgozar, Ali Masoudi-Nejad (2013) C-element: a New Clustering Algorithm to Find High Quality Functional Modules in PPI Networks. PLOS ONE. 8(9):e72366
8. Sahand Khakabimamaghani, Iman Sharafuddin, Norbert Dichter, Ina Koch and Ali Masoudi-Nejad (2013) QuateXelero: an accelerated exact network motif detection algorithm. PLOS ONE. 18;8(7):e68073
9. Isar Nassiri, Ali Masoudi-Nejad, Mahdi Jalili, Ali Moeini (2013) Discovering dominant pathways and signal–response relationships in signaling networks. Genomics. S0888-7543(13)00149-3
10. Javad Zahiri, Morteza Mohammad-Nouri, Reza Ebrahimpour, and Ali Masoudi-Nejad (2013) PPIevo: Protein-Protein Interaction Prediction from Evolutionary Information. Genomics. S0888-7543(13)00121-3
11. Sedigheh Mahdavi, Ali Salehzadeh-Yazdi, Ali Mohades, Ali Masoudi-Nejad (2013) Computational Structure Analysis of Biomacromolecule Complexes by Interface Geometry. Computational Biology and Chemistry. 25;47C:16-23
12. Isar Nassiri, Esmaeel Azadian, Roozbeh Sharafi, Ali Masoudi-Nejad (2013) Co-Occurrence: a Gene Reference Resource for Coincidental Patterns of Gene Mutations in Human Cancers. Journal of Proteomics and Bioinformatics. 6(9):197-201.
13. Isar Nassiri, Esmaeel Azadian, Ali Masoudi-Nejad (2013) A Sequence Motif Associated with Intrinsic Mutation Hot-Spots in Human Cancers. Journal of Proteomics and Bioinformatics. 6(9):173-186.
14. Reza Shamsaee, Mahmud Fathy, Ali Masoudi-Nejad (2013) Extracting a Cancer Model by Ant Colony Optimization Algorithm. International Journal of Data Mining and Bioinformatics. 7(6):1-13

2012

1. Gholamreza Bidkhori, Ali Moeini, Ali Masoudi-Nejad (2012) Modeling of tumor progression in non-small-cell lung cancer (NSCLC) and intrinsic resistance to TKI in loss of PTEN expression. PLOS ONE. 7(10): e48004
2. Hamed Ahmadi, Ali Ahmadi, Sadegh Azimzadeh-Jamalkandi, Mahdi Aliyari Shoorehdeli, Ali Salehzadeh-Yazdi, Gholamreza Bidkhori, Ali Masoudi-Nejad (2012) HomoTarget: a New Algorithm for Prediction of MicroRNA Targets in Homo sapiens. Genomics. 101(2):94–100
3. Isar Nassiri, Ali Masoudi-Nejad, Mahdi Jalili, Ali Moeini (2012) Normalized Similarity Index: An adjusted index to prioritize article citations. Journal of Informetrics. 7:91-98
4. Isar Nasiri, Ali Masoudi-Nejad, Mahdi Jalili, Ali Moeni (2012) Nonparametric Simulation of Signal Transduction Networks with Semi-Synchronized Update. PLOS ONE. 7(6):e39643
5. Ali Masoudi-Nejad, Mitra Anasariola, Ali Salehzadeh-Yazdi, Sahand Khakabi (2012) CytoKavosh: a Cytoscape Plug-in for Finding Network Motifs in Large Biological Networks. PLOS ONE. 7(8): e43287
6. Siavash Ghavami, Farshad Lahouti, Ali Masoudi-Nejad (2012) Modeling and Analysis of Abnormality Detection in Biomolecular Nano-Networks. Nano Communication Networks. 3(4): 229–241
7. Ali Masoudi-Nejad, Falk Schreiber, Zahra Razaghi MK (2012) Building Blocks of Biological Networks: A Review on Major Network Motif Discovery Algorithms. IET Systems Biology. 6 (5) 164-174
8. Sedigheh Mahdavi, Ali Mohades, Ali Salehzadeh Yazdi, Ali Masoudi-Nejad (2012) Computational Analysis of RNA-Protein Interaction interfaces via the Voronoi Diagram. Journal of Theoretical Biology. 293:55-64
9. Maryam Darabi, Ali Masoudi-Nejad, Ghorbanali Nemat-Zadeh (2012) Bioinformatics Study of the 3-hydroxy-3-methylglotaryl-Coenzyme A Reductase (HMGR) Gene in Gramineae. Molecular Biology Reports. DOI: 10.1007/s11033-012-1761-2
10. Katayoun Samimi-Rad., Mohsen Nasiri Toosi., Ali Masoudi-Nejad., Ali Najafi., Ramin Rahimnia., Fatemeh Asgari., Alireza Namazi Shabestari., Gholamreza Hassanpour., Seyed-Moayed Alavian., Freshteh Asgari (2012) Molecular epidemiology of hepatitis C virus among injection drug users in Iran. Archives of Virology. 157(10):1959-1965

2011 & ealier

1. Ali Masoudi-Nejad, Sara Movahedi, Ruy Jáuregui (2011) Genome-scale computational analysis of DNA curvature and repeats in Arabidopsis and rice uncovers plant-specific genomic properties. BMC Genomics. 12:214
2. Ehsan Habibi, Ali Masoudi-Nejad, Steven Haggarty (2011) Emerging Roles of Epigenetic Mechanisms in Parkinson's disease. Functional and Integrative Genomics. 11:523–537
3. Sadegh Azimzadeh, Ali Masoudi-Nejad (2011) RNAi Pathway Integration in Caenorhabditis elegans Development. Functional and Integrative Genomics. 11:389-405
4. Zahra Zamani, Amirhossein Hajihosseini, Ali Masoudi-Nejad (2010) Computational methodologies for analyzing, modeling and controlling gene regulatory networks. Biomedical Engineering and Computational Biology. 2:47–62.
5. Azimzadeh, S., Masoudi-Nejad, Ali (2009) Reconstruction of Arabidopsis thaliana Fully-Integrated Small RNA Pathway. Functional & Integrative Genomics. 9:419-432.
6. Razaghi, A., Ahrabian, H.,…. Masoudi-Nejad, Ali (2009) Kavosh: A New Algorithm for Finding Network Motifs. BMC Bioinformatics. 4:10:318.
7. Omidi, S., Schreiber, F., Masoudi-Nejad, Ali (2009) MODA: An Efficient Algorithm for Network Motif Discovery in Biological Networks. Genes and Genetic Systems. 84:385-395
8. Askary, A., Masoudi-Nejad, A., Mizbani, A., Naderi-Parizi, S., Purmasjedi, M (2009) N4: A Precise and Highly Sensitive Promoter Predictor Using Neural Network fed by Nearest Neighbors. Genes and Genetic Systems. 84: 425-430
9. R. Daie Ghazvini., H. Mirhendi., S. A. Ghiasian., A. Masoudi-Nejad., H. Shokri., M. Soltani., S. Haddadi., A. R. Khosravi (2011) Genotyping of Fusarium verticillioides strains producing fumonisin B1 in feed associated with animal health problems. Iranian Journal of Veterinary Research (IJVR). 8:309-316
10. Masoudi-Nejad, A., Goto, S., Endo, TR and Kanehisa, M (2007) Bioinformatics Resources for Plant Genomics Research. Methods Mol Biol. 406:437-458.
11. Nasr-Isfahani, S., Mirsafian, A., Masoudi-Nejad, A (2008) A New Approach for Touching Cells Segmentation. IEEE BioMedical Engineering and Informatics. 1:816-820 12. Masoudi-Nejad, A., Susumu Goto, Ruy Jauregui, Masumi Ito, Shuichi Kawashima,Yuki Moriya, Takashi R. Endo and Minoru Kanehisa (2007) EGENES: Transcriptome-based plant database of genes with metabolic pathway information and EST indices in KEGG. Plant Physiology. 144: 857-866
13. Masoudi-Nejad, A., Koichiro Tonomura, Shuichi Kawashima, Masumi Itoh, Minoru Kanehisa, Takashi Endo and Susumu Goto (2006) EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments. Nucleic Acids Research. 34: W459-W462.
14. Masoudi-Nejad, A., Nasuda, S., R. Waugh., Marrie-Therese Bihoreau., Endo, T.R. (2005) an alternative to radiation hybrid mapping for large-scale genome analysis in barley. Molecular Genetics and Genomics. 274: 589–594.
15. Ali Salehzadeh-Yazdi, Shiva Akbari-Birgani, Ali Masoudi-Nejad (2011) Diabetes and Systems Biology. JICS. 8(3): 63-67
16. Rahimi A. A. , Bahmani M. Kh. , Masoudi-Nejad A. , Saadati M. , Khosravi A. , Shafie Khani A (2010) Application of near-infrared spectroscopy and support vector machine in detection of HIV-1 infection. Kowsar Medical Journal, 15 (1) :23-29
17. Mostafa Hadian Dehkordi, Ali Masoudi-Nejad, Mohamad Nouri (2010) gpALIGNER: a fast algorithm for global pairwise alignment of DNA sequences. IJCCE. Accepted
18. Monireh Cheniany, Hassan Ebrahimzadeh, Ali Masoudi-Nejad (2011) Effect of expression of chalcone synthase gene on flavonoids content and rooting ability in Juglans regia L. Plant Cell, Tissue and Organ Culture. DOI 10.1007/s11240-011-0072-y
19. Reza Shamsaee, Mahmood Fathy, Ali Masoudi-Nejad (2010) Integration and Reduction of Microarray Data Using Information Theory Approach. IJCCE. 29(4):19-29
20. Daie Ghazvini, R. Mirhendi, H. Ghiasian, S. A. Masoudi-Nejad, A. Shokri, H. Soltani, M. Haddadi, S and Khosravi, A. R. (2011) Genotyping of Fusarium verticillioides strains producing fumonisin B1 in feed associated with animal health problems. Iranian Journal of Veterinary Research. 12(4): 309- 316
21. Hesam T. Dashti, Ali Masoudi-Nejad (2010) Mining Biological Repetitive Sequences Using Support Vector Machines and Fuzzy SVM. IJCCE. 29(4):1-18
22. Hesam T. Dashti, Ali Masoudi-Nejad (2010) Finding Exact and Solo LTR-Retrotransposons in Biological Sequences Using SVM. IJCCE. Accepted
23. Sedigheh Mahdavi, Ali Mohades Khorasani, Samad Jahandideh, Ali Masoudi-Nejad (2010) Recognition Protein-RNA Interaction interfaces via the Voronoi Diagram. JICS. 7:S1-A61
24. Khosravi A, Behzad F, Sabokbar A, Shokri H, Haddadi S, Masoudi-Nejad A (2010) Molecular typing of Epidermophyton floccosum isolated from patients with dermatophytosis by RAPD-PCR. J Basic Microbiol. 1:S68-S73
25. Monireh Cheniany, Hassan Ebrahimzadeh, Ali Masoudi-Nejad, Kourosh Vahdati and Charles Leslie. Effect of endogenous phenols and some antioxidant enzyme activities on rooting of Persian walnut. African Journal of Plant Science. 4(12): 479-487
26. Yazdi-Samadi, B., Masoudi-Nejad, A., Abd-Mishani, S., Sarblouki, M. (2003) Quantitative Study of Seed Storage Proteins (HMW-GS) in Wheat Using Electrophoresis and Laser Scanning Densitometry. Physiology and Molecular Biology of Plants. 7:61-66.
27. Tsuchida, M., Fukushima, T., Shuhei Nasuda, S., Masoudi-Nejad, A., Ishikawa, G., Nakamura, T., and Takashi R. Endo (2008) Dissection of rye chromosome 1R in common wheat. Genes and Genetics System. 83: 43-53.
28. Haddadi, S., Khosravi, A.R., Rostami, M., Masoudi-Nejad, A., Soltani, S., Soltani, M. (2008) Molecular Typing of Iranian Cladosporium Isolates Using RAPD-PCR. Journal of Biotechnology. 7(4): 1-6.
29. Modarressi, M.H., Ranjzad, F., Tavallaei,M ., ,Asadi, A., Zaim-Kohan, H., Masoudi-Nejad, A (2008) Importance of 273rd residue in proteolytic processing for production of functional TSGA10 protein. Bioscience Hypotheses. 1:336-373.
30. Masoudi-Nejad, A., Nasuda, S., Kawabe, A., Endo, T.R. (2002) Molecular cloning, sequencing and chromosomal mapping of a 1A-encoded omega-gliadin gene from wheat. Genome. 45: 661–669.
31. Masoudi-Nejad, A., Nasuda, S., McIntosh, R.A., Endo, T.R. (2002) Transfer of rye chromosome segments to wheat by a gametocidal system. Chromosome Research. 10:349-57.
32. Endo, T. R., Masoudi-Nejad, A., Nasuda, S., McIntosh, R. A. (2001) Separation of rust resistance genes from Sec-1 on rye chromosome 1R by the gametocidal recombination. Chromosome Research. 9:33-43. 33. Masoudi-Nejad, A. (2000) Wheat storage protein. Wheat Information Service. 92:33.